Recommendations for performing measurements of apparent equilibrium constants of enzyme-catalyzed reactions and for reporting the results of these measurements

• Robert N. Goldberg,
• Robert T. Giessmann,
• Peter J. Halling,
• Carsten Kettner and
• Hans V. Westerhoff

Beilstein J. Org. Chem. 2023, 19, 303–316, doi:10.3762/bjoc.19.26

• , Free University Amsterdam, The Netherlands School of Biological Sciences, Faculty of Biology, Medicine, and Health, University of Manchester, Manchester, UK 10.3762/bjoc.19.26 Abstract The measurement of values of apparent equilibrium constants K′ for enzyme-catalyzed reactions involve a substantial

• general discussion of various aspects of these equilibrium measurements as well as STRENDA (Standards for Reporting Enzymology Data) recommendations regarding the measurements and the reporting of results. Keywords: enzyme-catalyzed reactions; equilibrium constant; standards; thermodynamics; Perspective

• enzyme-catalyzed reactions and to gain insight into the operation and modeling of metabolic pathways [3] and genome wide networks [4], particularly if one has limited in vivo measurements of the substances in the pathway [5][6]. However, we have observed that a fair number of investigators overlooked

Insight into functionalized-macrocycles-guided supramolecular photocatalysis

• Minzan Zuo,
• Krishnasamy Velmurugan,
• Kaiya Wang,
• Xueqi Tian and
• Xiao-Yu Hu

Beilstein J. Org. Chem. 2021, 17, 139–155, doi:10.3762/bjoc.17.15

• also discussed. Keywords: host–guest chemistry; macrocycles; noncovalent interactions; supramolecular photocatalysis; Introduction Enzyme-catalyzed reactions are often carried out fantastically in nature via noncovalent interactions of a substrate [1][2]. Inspired by these natural processes, chemists

A consensus-based and readable extension of Linear Code for Reaction Rules (LiCoRR)

• Benjamin P. Kellman,
• Yujie Zhang,
• Emma Logomasini,
• Eric Meinhardt,
• Karla P. Godinez-Macias,
• Austin W. T. Chiang,
• James T. Sorrentino,
• Chenguang Liang,
• Bokan Bao,
• Yusen Zhou,
• Sachiko Akase,
• Isami Sogabe,
• Thukaa Kouka,
• Elizabeth A. Winzeler,
• Iain B. H. Wilson,
• Matthew P. Campbell,
• Sriram Neelamegham,
• Frederick J. Krambeck,
• Kiyoko F. Aoki-Kinoshita and
• Nathan E. Lewis

Beilstein J. Org. Chem. 2020, 16, 2645–2662, doi:10.3762/bjoc.16.215

• insights into the glycosylation types. Some models of glycan synthesis generated reaction rule tables with an additional column Enzyme Commission number (EC number) [7][16][37]. The EC number system is a numerical classification scheme for enzyme-catalyzed reactions that provides an unambiguous accession

Oxidative dehydrogenation of C–C and C–N bonds: A convenient approach to access diverse (dihydro)heteroaromatic compounds

• Santanu Hati,
• Ulrike Holzgrabe and
• Subhabrata Sen

Beilstein J. Org. Chem. 2017, 13, 1670–1692, doi:10.3762/bjoc.13.162

• we discuss a few of such examples. Bioinspired aerobic dehydrogenation The bioinspired aerobic dehydrogenation strategy is an environmentally “green” way to access heteroaromatic moieties from their heterocyclic precursors [68]. The approach is inspired from enzyme catalyzed reactions where organic

New approaches to organocatalysis based on C–H and C–X bonding for electrophilic substrate activation

• Pavel Nagorny and
• Zhankui Sun

Beilstein J. Org. Chem. 2016, 12, 2834–2848, doi:10.3762/bjoc.12.283

• examples demonstrate the effectiveness of such interactions for organocatalyst design. While C–H···A hydrogen bonds have been invoked in biological processes, halogen bonding is not commonly observed in natural enzyme-catalyzed reactions. Therefore, application of these new interactions for small molecule

Biosynthesis of rare hexoses using microorganisms and related enzymes

• Zijie Li,
• Yahui Gao,
• Hideki Nakanishi,
• Xiaodong Gao and
• Li Cai

Beilstein J. Org. Chem. 2013, 9, 2434–2445, doi:10.3762/bjoc.9.281

• enzyme-catalyzed reactions are often highly enantioselective and regioselective. In addition, enzymatic reactions are usually performed under mild conditions and are environmentally friendly. However, two major challenges remain in this endeavor: 1) microorganisms and related enzymes presently applied in

Chemoenzymatic synthesis and biological evaluation of enantiomerically enriched 1-(β-hydroxypropyl)imidazolium- and triazolium-based ionic liquids

• Paweł Borowiecki,
• Małgorzata Milner-Krawczyk and
• Jan Plenkiewicz

Beilstein J. Org. Chem. 2013, 9, 516–525, doi:10.3762/bjoc.9.56

• -catalyzed reactions such as the type and quantity of the biocatalyst and solvent on the enantiomers resolution was investigated. The aim was to achieve a conversion close to 50% and 99% ee for the slow-reacting substrates and product enantiomers. Four different lipases, i.e., two native (Amano PS, Amano AK

• oxide (1) under solvent-free conditions. The epoxide ring-opening reactions were carried for 24 h at elevated temperature (32 °C) and resulted in the formation of the appropriate alcohols (±)-3a and (±)-3b in high yields (Scheme 1). In the next step, the influence of crucial parameters in enzyme

Efficient and selective chemical transformations under flow conditions: The combination of supported catalysts and supercritical fluids

• M. Isabel Burguete,
• Eduardo García-Verdugo and
• Santiago V. Luis

Beilstein J. Org. Chem. 2011, 7, 1347–1359, doi:10.3762/bjoc.7.159

• for a vast number of chemical transformations [81][82]. Besides, a great variety (more than 13,000) of enzyme-catalyzed reactions have been successfully demonstrated at the laboratory scale, offering clear advantages for the synthesis of enantiopure fine chemicals over any other kind of catalysts [83